rvmeta.readScoreByRange: Read score test statistics by range from METAL-format files.

In seqminer: Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R

Read score test statistics by range from METAL-format files.

Description

Read score test statistics by range from METAL-format files.

Usage

rvmeta.readScoreByRange(scoreTestFiles, tabixRange)

Arguments

scoreTestFiles	character vector, score test output files (rvtests outputs using –meta score)
tabixRange	character, a text indicating which range in the VCF file to extract. e.g. 1:100-200

Value

score test statistics within given range

See Also

http://zhanxw.com/seqminer/ for online manual and examples

Examples

scoreFileName = system.file("rvtests/rvtest.MetaScore.assoc.anno.gz", package = "seqminer")
cfh <- rvmeta.readScoreByRange(scoreFileName, "1:196621007-196716634")

seqminer documentation built on Oct. 7, 2024, 1:15 a.m.