rvmeta.readSkewByRange: Read skew by range from METAL-format files.

In seqminer: Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R

Read skew by range from METAL-format files.

Description

Read skew by range from METAL-format files.

Usage

rvmeta.readSkewByRange(skewFile, tabixRange)

Arguments

skewFile	character, a skew file (rvtests outputs using –meta skew)
tabixRange	character, a text indicating which range in the VCF file to extract. e.g. 1:100-200

Value

an 3-dimensional array of skewness within given range

See Also

http://zhanxw.com/seqminer/ for online manual and examples

Examples

skewFileName = system.file("rvtests/rvtest.MetaSkew.assoc.gz", package = "seqminer")
cfh <- rvmeta.readSkewByRange(skewFileName, "1:196621007-196716634")

seqminer documentation built on Oct. 7, 2024, 1:15 a.m.