rvmeta.readSkewByRange: Read skew by range from METAL-format files.
In seqminer: Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R
rvmeta.readSkewByRange R Documentation
Read skew by range from METAL-format files.
Description
Read skew by range from METAL-format files.
Usage
rvmeta.readSkewByRange(skewFile, tabixRange)
Arguments
skewFile
character, a skew file (rvtests outputs using –meta skew)
tabixRange
character, a text indicating which range in the VCF file to extract. e.g. 1:100-200
Value
an 3-dimensional array of skewness within given range
See Also
http://zhanxw.com/seqminer/ for online manual and examples
Examples
skewFileName = system.file("rvtests/rvtest.MetaSkew.assoc.gz", package = "seqminer")
cfh <- rvmeta.readSkewByRange(skewFileName, "1:196621007-196716634")
seqminer documentation built on May 29, 2024, 8:50 a.m.
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| rvmeta.readSkewByRange | R Documentation |
Read skew by range from METAL-format files.
Description
Read skew by range from METAL-format files.
Usage
rvmeta.readSkewByRange(skewFile, tabixRange)
Arguments
skewFile |
character, a skew file (rvtests outputs using –meta skew) |
tabixRange |
character, a text indicating which range in the VCF file to extract. e.g. 1:100-200 |
Value
an 3-dimensional array of skewness within given range
See Also
http://zhanxw.com/seqminer/ for online manual and examples
Examples
skewFileName = system.file("rvtests/rvtest.MetaSkew.assoc.gz", package = "seqminer")
cfh <- rvmeta.readSkewByRange(skewFileName, "1:196621007-196716634")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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