createSingleChromosomeVCFIndex: Create a single chromosome index

In seqminer: Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R

Create a single chromosome index

Description

Create a single chromosome index

Usage

createSingleChromosomeVCFIndex(fileName, indexFileName = NULL)

Arguments

fileName	character, represents an input VCF file (Bgzipped, with Tabix index)
indexFileName	character, by default, create 'fileName'.scIdx

Value

indexFileName if success, or NULL is failed

See Also

http://zhanxw.com/seqminer/ for online manual and examples

Examples

fileName = system.file("vcf/all.anno.filtered.extract.vcf.gz", package = "seqminer")
cfh <- createSingleChromosomeVCFIndex(fileName)

seqminer documentation built on Oct. 7, 2024, 1:15 a.m.