getRefBase: Annotate a test variant
In seqminer: Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R
getRefBase R Documentation
Annotate a test variant
Description
Annotate a test variant
Usage
getRefBase(reference, chrom, position, len = NULL)
Arguments
reference
path to the reference genome file (.fa file)
chrom
a vector of chromosome names
position
a vector of chromosome positions
len
a vector of length
Value
based extracted from the reference genome
seqminer documentation built on Oct. 7, 2024, 1:15 a.m.
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| getRefBase | R Documentation |
Annotate a test variant
Description
Annotate a test variant
Usage
getRefBase(reference, chrom, position, len = NULL)
Arguments
reference |
path to the reference genome file (.fa file) |
chrom |
a vector of chromosome names |
position |
a vector of chromosome positions |
len |
a vector of length |
Value
based extracted from the reference genome
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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