API for seqminer
Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R

Global functions
.onAttach Source code
SeqMiner Man page
SeqMiner-package Man page
[.PlinkFile Man page
`[.PlinkFile` Source code
addJob Man page Source code
annotateGene Man page Source code
annotatePlain Man page Source code
annotateVcf Man page Source code
createSingleChromosomeBCFIndex Man page Source code
createSingleChromosomeVCFIndex Man page Source code
download.annotation.resource Man page Source code
getCovPair Man page Source code
getRefBase Man page Source code
hasIndex Man page Source code
isDirWritable Man page Source code
isInRange Man page Source code
isTabixRange Man page Source code
isURL Man page Source code
local.file.exists Source code
makeAnnotationParameter Man page Source code
newJob Man page Source code
newWorkflow Man page Source code
openPlink Man page Source code
readBGENToListByGene Man page Source code
readBGENToListByRange Man page Source code
readBGENToMatrixByGene Man page Source code
readBGENToMatrixByRange Man page Source code
readPlinkToMatrixByIndex Man page Source code
readSingleChromosomeBCFToMatrixByRange Man page Source code
readSingleChromosomeVCFToMatrixByRange Man page Source code
readVCFToListByGene Man page Source code
readVCFToListByRange Man page Source code
readVCFToMatrixByGene Man page Source code
readVCFToMatrixByRange Man page Source code
rvmeta.readCovByRange Man page Source code
rvmeta.readDataByGene Man page Source code
rvmeta.readDataByRange Man page
rvmeta.readNullModel Man page Source code
rvmeta.readScoreByRange Man page Source code
rvmeta.readSkewByRange Man page Source code
rvmeta.writeCovData Man page
rvmeta.writeScoreData Man page
tabix.createIndex Man page Source code
tabix.createIndex.meta Man page Source code
tabix.createIndex.vcf Man page Source code
tabix.read Man page Source code
tabix.read.header Man page Source code
tabix.read.table Man page Source code
validateAnnotationParameter Man page Source code
verifyFilename Man page Source code
writeWorkflow Man page Source code
seqminer documentation built on March 26, 2020, 5:31 p.m.