tabix.read.header: Read tabix file, similar to running tabix in command line.
In seqminer: Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R
tabix.read.header R Documentation
Read tabix file, similar to running tabix in command line.
Description
Read tabix file, similar to running tabix in command line.
Usage
tabix.read.header(tabixFile, skippedLine = FALSE)
Arguments
tabixFile
character, an tabix indexed file
skippedLine
logical, whether to read tabix skipped lines (when used 'tabix -S NUM')
Value
a list
See Also
http://zhanxw.com/seqminer/ for online manual and examples
Examples
fileName = system.file("vcf/all.anno.filtered.extract.vcf.gz", package = "seqminer")
snp <- tabix.read.header(fileName)
seqminer documentation built on Sept. 2, 2023, 9:08 a.m.
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| tabix.read.header | R Documentation |
Read tabix file, similar to running tabix in command line.
Description
Read tabix file, similar to running tabix in command line.
Usage
tabix.read.header(tabixFile, skippedLine = FALSE)
Arguments
tabixFile |
character, an tabix indexed file |
skippedLine |
logical, whether to read tabix skipped lines (when used 'tabix -S NUM') |
Value
a list
See Also
http://zhanxw.com/seqminer/ for online manual and examples
Examples
fileName = system.file("vcf/all.anno.filtered.extract.vcf.gz", package = "seqminer")
snp <- tabix.read.header(fileName)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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