getCovPair: Extract pair of positions by ranges
In seqminer: Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R
getCovPair R Documentation
Extract pair of positions by ranges
Description
Extract pair of positions by ranges
Usage
getCovPair(covData, rangeList1, rangeList2)
Arguments
covData
a covariance matrix with positions as dimnames
rangeList1
character specify a range, 1-based index
rangeList2
character specify a range, 1-based index
Value
a covariance matrix
covFileName = system.file("rvtests/rvtest.MetaCov.assoc.gz", package = "seqminer")
cfh <- rvmeta.readCovByRange(covFileName, "1:196621007-196716634")
rangeList1 <- "1:196621007-196700000"
rangeList2 <- "1:196700000-196716634"
getCovPair(cfh, rangeList1, rangeList2)
seqminer documentation built on Sept. 2, 2023, 9:08 a.m.
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| getCovPair | R Documentation |
Extract pair of positions by ranges
Description
Extract pair of positions by ranges
Usage
getCovPair(covData, rangeList1, rangeList2)
Arguments
covData |
a covariance matrix with positions as dimnames |
rangeList1 |
character specify a range, 1-based index |
rangeList2 |
character specify a range, 1-based index |
Value
a covariance matrix covFileName = system.file("rvtests/rvtest.MetaCov.assoc.gz", package = "seqminer") cfh <- rvmeta.readCovByRange(covFileName, "1:196621007-196716634") rangeList1 <- "1:196621007-196700000" rangeList2 <- "1:196700000-196716634" getCovPair(cfh, rangeList1, rangeList2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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