tabix.createIndex.vcf: Create tabix index for bgzipped VCF file

Description Usage Arguments See Also Examples

View source: R/seqminer.R

Description

Create tabix index for bgzipped VCF file

Usage

1
tabix.createIndex.vcf(bgzipVcfFile)

Arguments

bgzipVcfFile

character, input vcf file

See Also

http://zhanxw.com/seqminer/ for online manual and examples

Examples

1
2
fileName = system.file("vcf/all.anno.filtered.extract.vcf.gz", package = "seqminer")
tabix.createIndex.vcf(fileName)

Example output

[ti_index_build2] fail to create the index file.
Create tabix index failed for [ /usr/local/lib/R/site-library/seqminer/vcf/all.anno.filtered.extract.vcf.gz ]!

seqminer documentation built on Feb. 7, 2022, 9:08 a.m.