CalcRped: Calculate Pedigree Relatedness
In sequoia: Pedigree Inference from SNPs
CalcRped R Documentation
Calculate Pedigree Relatedness
Description
Morph pedigree into a kinship2 compatible format and use
kinship to calculate kinship coefficients;
relatedness = 2*kinship.
Usage
CalcRped(Pedigree, OUT = "DF")
Arguments
Pedigree
dataframe with columns id-dam-sire.
OUT
desired output format, 'M' for matrix or 'DF' for dataframe with
columns IID1 - IID2 - R.ped.
Value
A matrix or dataframe.
sequoia documentation built on Sept. 8, 2023, 5:29 p.m.
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| CalcRped | R Documentation |
Calculate Pedigree Relatedness
Description
Morph pedigree into a kinship2 compatible format and use
kinship to calculate kinship coefficients;
relatedness = 2*kinship.
Usage
CalcRped(Pedigree, OUT = "DF")
Arguments
Pedigree |
dataframe with columns id-dam-sire. |
OUT |
desired output format, 'M' for matrix or 'DF' for dataframe with columns IID1 - IID2 - R.ped. |
Value
A matrix or dataframe.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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