Geno_HSg5: Example genotype file: 'HSg5'

In sequoia: Pedigree Inference from SNPs

Example genotype file: 'HSg5'

Description

Simulated genotype data for all* individuals in Pedigree Ped_HSg5 (*: with 40

Usage

data(Geno_HSg5)

Format

A genotype matrix with 920 rows (ids) and 200 columns (SNPs). Each SNP is coded as 0/1/2 copies of the reference allele, with -9 for missing values. Ids are stored as rownames.

Author(s)

Jisca Huisman, [e-mail]

See Also

LH_HSg5, SimGeno, SeqOUT_HSg5

Examples

## Not run: 
# this output was created as follows:
Geno_HSg5 <- SimGeno(Ped = Ped_HSg5, nSnp = 200, ParMis=0.4,
                     CallRate = 0.9, SnpError = 0.005)

## End(Not run)

sequoia documentation built on Sept. 8, 2023, 5:29 p.m.