MkFortParams: PARAM to FortPARAM

In sequoia: Pedigree Inference from SNPs

PARAM to FortPARAM

Description

Convert list PARAM into a list with integer-only and double-only vectors, to be passed to Fortran.

Usage

MkFortParams(PARAM, fun = "main")

Arguments

PARAM	list with input parameters.
fun	function from which MkFortParams is called, determines which elements are included in the output list.

Value

A list with elements

Ng	Integer, number of individuals
SpecsInt	8 integers: nSnp MaxMismatchV; DUP - OH - ME MaxSibshipSize Complx, 0=mono, 1=simp, 2=full quiet, -1=verbose, 0=FALSE, 1=TRUE nAgeCl, nrow(AgePriors)
SpecsDbl	2 double precision numbers: Tfilter (< 0) Tassign (> 0)
ErrM	double, 3x3 matrix passed as length-9 vector
SpecsIntMkPed	fun='main' only MaxSibIter AgeEffect, 0=no, 1=yes, 2=extra CalcLLR, 0=FALSE, 1=TRUE Herm, 0=no, 1= dam/sire distinction, 2=no dam/sire distinction
SpecsIntAmb	fun='mayberel' only ParSib 1=par, 2=ped nAmbMax

sequoia documentation built on Sept. 8, 2023, 5:29 p.m.