GetDummifiable: Dummifiable IDs

In sequoia: Pedigree Inference from SNPs

Dummifiable IDs

Description

Get the dummifiable individuals, using various possible criteria

Usage

GetDummifiable(Pedigree, gID, minSibSize)

Arguments

Pedigree	dataframe with id - dam - sire.
gID	vector with IDs of SNP-genotyped individuals.
minSibSize	minimum requirements to be considered dummifiable: '1sib' : sibship of size 1, with or without grandparents. The latter aren't really a sibship, but can be useful in some situations. '1sib1GP': sibship of size 1 with at least 1 grandparent '2sib': at least 2 siblings, with or without grandparents. Used by PedCompare .

Details

values of minSibSize used by calling functions

1sib

CalcOHLLR, CalcPairLL

1sib1GP

getAssignCat (default when user called)

2sib

PedCompare

Value

A length-2 list (dams, sires) with each element a vector with dummifiable ids

sequoia documentation built on Sept. 8, 2023, 5:29 p.m.