orderLH: Order Lifehistory Data

In sequoia: Pedigree Inference from SNPs

Order Lifehistory Data

Description

Order lifehistory data to match order of IDs in genotype data, filling in gaps with missing values.

Usage

orderLH(LH = NULL, gID = NULL)

Arguments

LH	dataframe with lifehistory information: ID max. 30 characters long, Sex 1 = females, 2 = males, other numbers = unknown, Birth Year (or hatching year) Use negative numbers to denote missing values. BY.min minimum birth year (optional) BY.max maximum birth year (optional)
gID	character vector with IDs in genotype data, in order of occurrence.

Value

A dataframe with the same 5 columns, but with individuals in exactly the same order as gID, including padding with 'empty' rows if an individual in gID was not in the input-LH. Missing values are recoded to 3 for the 'Sex' column, and -999 for the birth year columns.

sequoia documentation built on July 4, 2024, 1:10 a.m.