CheckLH: Check LifeHistData

In sequoia: Pedigree Inference from SNPs

Check LifeHistData

Description

Check that the provided LifeHistData is in the correct format.

Usage

CheckLH(LifeHistData, gID = NA, sorted = TRUE, returnDups = FALSE)

Arguments

LifeHistData	the dataframe with ID - Sex - Birth year, and optionally BY.min - BY.max - YearLast.
gID	character vector with names of genotyped individuals, i.e. rownames(GenoM).
sorted	logical, return lifehistdata for genotyped individuals only, in strictly the same order. Will including padding with 'empty' rows if an individual in gID was not in the input-LH.
returnDups	logical, instead of just the (sorted) LifeHistData, return a list that also includes a dataframe with duplicate entries and/or a character vector with genotyped IDs not occuring in LifeHistData (as formerly returned by DuplicateCheck).

Value

A dataframe with LifeHistData formatted for use by the Fortran part of the program, or a list with duplicate and missing entries.

sequoia documentation built on Sept. 8, 2023, 5:29 p.m.