FortifyPairs: Make Pairs Fortran Compatible
In sequoia: Pedigree Inference from SNPs
FortifyPairs R Documentation
Make Pairs Fortran Compatible
Description
Convert dataframe Pairs into a list of integer vectors.
Called only by CalcPairLL.
Usage
FortifyPairs(Pairs, gID, Renamed, LH)
Arguments
Pairs
dataframe with columns ID1 - ID2 - Sex1 - Sex2 - AgeDif - focal
- k.
gID
character vector with IDs of genotyped individuals.
Renamed
length-2 list (dams, sires) each with a 2-column dataframe.
matching character IDs to negative numbers, for dummified individuals.
Element of the list returned by PedToNum.
LH
lifehistory dataframe, ID - Sex - BirthYear.
Value
A named list, with elements ID - Sex - AgeDif - focal. The first two
are per individual and thus each have length 2*nrow(Pairs), while the last
two have length 1*nrow(Pairs).
sequoia documentation built on Sept. 8, 2023, 5:29 p.m.
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| FortifyPairs | R Documentation |
Make Pairs Fortran Compatible
Description
Convert dataframe Pairs into a list of integer vectors.
Called only by CalcPairLL.
Usage
FortifyPairs(Pairs, gID, Renamed, LH)
Arguments
Pairs |
dataframe with columns ID1 - ID2 - Sex1 - Sex2 - AgeDif - focal - k. |
gID |
character vector with IDs of genotyped individuals. |
Renamed |
length-2 list (dams, sires) each with a 2-column dataframe.
matching character IDs to negative numbers, for dummified individuals.
Element of the list returned by |
LH |
lifehistory dataframe, ID - Sex - BirthYear. |
Value
A named list, with elements ID - Sex - AgeDif - focal. The first two are per individual and thus each have length 2*nrow(Pairs), while the last two have length 1*nrow(Pairs).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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