ReOrderDums: Re-order likelihood vector

In sequoia: Pedigree Inference from SNPs

Re-order likelihood vector

Description

change the order for dummy individuals so that the results are easily comparable with genotyped individuals

Usage

ReOrderDums(LLM, Complex = "full")

Arguments

LLM	a matrix with log10-likelihoods; individuals in rows.

Value

a matrix with similar dimensions, but changed column order:

.	GP \rightarrow PO (GP of sibship = parent of dummy)
.	FA \rightarrow FS
.	HA \rightarrow HS
.	FS \rightarrow FA (FS of sibs=offspring of dummy, NOT parent)
.	HS \rightarrow HA
.	U \rightarrow U
.	PO \rightarrow DUP (only if 'DUP' already among column names)

sequoia documentation built on Aug. 21, 2025, 5:43 p.m.