API for shinyWGD
'Shiny' Application for Whole Genome Duplication Analysis
| Global functions | |
|---|---|
| CalHomoConcentration | Man page Source code |
| CalPvalue | Man page Source code |
| CountOrthologs | Man page Source code |
| PeaksInKsDistributionValues | Man page Source code |
| SiZer | Man page Source code |
| SignifFeatureRegion | Man page Source code |
| TimeTreeFecher | Man page Source code |
| analysisEachCluster | Man page Source code |
| bootStrapPeaks | Man page Source code |
| calculateKsDistribution4wgd_multiple | Man page Source code |
| checkFileExistence | Man page Source code |
| check_gff_from_file | Man page Source code |
| check_gff_input | Man page Source code |
| check_proteome_from_file | Man page Source code |
| check_proteome_input | Man page Source code |
| cluster_synteny | Man page Source code |
| computing_depth | Man page Source code |
| computing_depth_paranome | Man page Source code |
| create_ksrates_cmd | Man page Source code |
| create_ksrates_cmd_from_table | Man page Source code |
| create_ksrates_configure_file_based_on_table | Man page Source code |
| create_ksrates_configure_file_v2 | Man page Source code |
| create_ksrates_expert_parameter_file | Man page Source code |
| dfltBWrange | Man page Source code |
| dfltCounts | Man page Source code |
| downloadButton_custom | Man page Source code |
| drvkde | Man page Source code |
| extractCluster | Man page Source code |
| extract_first_part | Man page Source code |
| find_peaks | Man page |
| generateKsDistribution | Man page Source code |
| generate_ksd | Man page Source code |
| get_segments | Man page Source code |
| is.ksv | Man page Source code Source code |
| is.not.null | Man page Source code |
| is_fasta_cds | Man page Source code |
| ks_mclust_v2 | Man page Source code |
| map_informal_name_to_latin_name | Man page Source code |
| mix_logNormal_Ks | Man page Source code |
| modeFinder | Man page Source code |
| obtain_chromosome_length | Man page Source code |
| obtain_chromosome_length_filter | Man page Source code |
| obtain_coordiantes_for_anchorpoints | Man page Source code |
| obtain_coordiantes_for_anchorpoints_ks | Man page Source code |
| obtain_coordiantes_for_segments | Man page Source code |
| obtain_coordinates_for_segments_multiple | Man page Source code |
| obtain_mean_ks_for_each_multiplicon | Man page Source code |
| parse_EMMIX | Man page Source code |
| parse_one_EMMIX | Man page Source code |
| read.wgd_ksd | Man page Source code |
| read_data_file | Man page Source code |
| relativeRate | Man page Source code |
| remove_inner_stop_codon_sequence | Man page Source code |
| remove_old_dirs | Man page Source code |
| replace_informal_name_to_latin_name | Man page Source code |
| resampleKsDistribution | Man page Source code |
| run_emmix_kmeas | Man page Source code |
| runshinyWGD | Man page Source code |
| symconv.ks | Man page |
| symconv2D.ks | Man page Source code |
| symconv3D.ks | Man page Source code |
| symconv4D.ks | Man page Source code |
