API for tmod
Feature Set Enrichment Analysis for Metabolomics and Transcriptomics
| Global functions | |
|---|---|
| .adapt_cex | Source code |
| .alphacol | Source code |
| .auto_labels | Source code |
| .boxpie.addlines | Source code |
| .boxpie.calculate.polygon | Source code |
| .catf | Source code |
| .check.limma | Source code |
| .cluster_mods | Source code |
| .cohensd | Source code |
| .combn_upset | Source code |
| .getColFunc | Source code |
| .get_effect_size | Source code |
| .get_id_ord | Source code |
| .get_modnames | Source code |
| .getmodules_gs | Source code |
| .gettmod | Source code |
| .gradientpal | Source code |
| .importMsigDBGMT | Source code |
| .importMsigDBXML | Source code |
| .limma.ci.msd | Source code |
| .limma.msd | Source code |
| .mset_sanity_check_gs | Source code |
| .onAttach | Source code |
| .pformat | Source code |
| .piecheck | Source code |
| .plotGrid | Source code |
| .prep_list | Source code |
| .preparePlotFunc | Source code |
| .printf | Source code |
| .pvalEffectPlotLegend | Source code |
| .selCalcXYWH | Source code |
| .selPiePlotFunc | Source code |
| .tmod2DataFrameRowsFeatures | Source code |
| .tmod2DataFrameRowsModule | Source code |
| .tmodTest | Source code |
| .upset_find_groups | Source code |
| .upset_generate_combinations | Source code |
| .xcheck | Source code |
| Egambia | Man page |
| EgambiaResults | Man page |
| [.tmod | Man page |
| [.tmodGS | Man page |
| as_tmodGS | Man page |
| cell_signatures | Man page |
| check_tmod_gs | Man page Source code |
| eigengene | Man page Source code |
| evidencePlot | Man page Source code |
| filterGS | Man page Source code |
| getGenes | Man page Source code |
| getModuleMembers | Man page Source code |
| ggEvidencePlot | Man page Source code |
| ggPanelplot | Man page Source code |
| hgEnrichmentPlot | Man page Source code |
| length.tmodGS | Man page |
| makeTmod | Man page |
| makeTmodFromDataFrame | Man page Source code |
| makeTmodGS | Man page Source code |
| modCorPlot | Man page Source code |
| modGroups | Man page Source code |
| modOverlaps | Man page Source code |
| modcors | Man page Source code |
| modjaccard | Man page Source code |
| modmetabo | Man page |
| pcaplot | Man page Source code |
| plot.tmodPCA | Source code |
| print.tmodGS | Man page |
| pvalEffectPlot | Man page Source code |
| showGene | Man page Source code |
| showModule | Man page Source code |
| simpleBoxpie | Man page Source code |
| simplePie | Man page Source code |
| simpleRug | Man page Source code |
| tbmprof | Man page |
| tmod | Man page |
| tmod-data | Man page |
| tmod-package | Man page |
| tmod2DataFrame | Man page Source code |
| tmod2tmodGS | Man page |
| tmodAUC | Man page Source code |
| tmodCERNOtest | Man page Source code |
| tmodDecideTests | Man page Source code |
| tmodGeneSetTest | Man page Source code |
| tmodHGtest | Man page Source code |
| tmodImportMSigDB | Man page Source code |
| tmodLEA | Man page Source code |
| tmodLEASummary | Man page Source code |
| tmodLimmaDecideTests | Man page Source code |
| tmodLimmaTest | Man page Source code |
| tmodLimmaTopTable | Man page Source code |
| tmodPCA | Man page Source code |
| tmodPLAGEtest | Man page Source code |
| tmodPal | Man page Source code |
| tmodPanelPlot | Man page Source code |
| tmodSummary | Man page Source code |
| tmodTagcloud | Man page Source code |
| tmodUtest | Man page Source code |
| tmodZtest | Man page Source code |
| tmod_ids | Man page |
| tmod_ids<- | Man page |
| tmod_titles | Man page |
| tmod_titles<- | Man page |
| upset | Man page Source code |
| upsetPlot | Source code |
| vaccination | Man page |
