Files in tmod
Feature Set Enrichment Analysis for Metabolomics and Transcriptomics
MD5
ChangeLog
README.md
NAMESPACE
DESCRIPTION
R/tmod-package.R
R/celltypes.R
R/classes2.R
R/limma.R
R/multivariate.R
R/importexport.R
R/modmetabo.R
R/visualizations.R
R/modstats.R
R/Egambia.R
R/plotwidgets.R
R/lem.R
R/tmodSummary.R
R/helpers.R
R/statisticaltests.R
R/tmod-data.R
R/panelplots.R
inst/CITATION
inst/doc/tmod.R
inst/doc/tmod.html
inst/doc/tmod.Rmd
build/vignette.rds
tests/testthat.R
tests/testthat/res_CERNO.csv
tests/testthat/res_LEA.csv
tests/testthat/test_importexport.R
tests/testthat/test_data.R
tests/testthat/msigdb_test.xml
tests/testthat/test_visualisations.R
tests/testthat/res_Z.csv
tests/testthat/test_eigengenes.R
tests/testthat/res_HG.csv
tests/testthat/res_PLAGE.csv
tests/testthat/res_GeneSetTest.csv
tests/testthat/sample_results.csv
tests/testthat/test_class.R
tests/testthat/res_AUC.csv
tests/testthat/res_U.csv
tests/testthat/test_tests.R
tests/testthat/sample_data.csv
tests/testthat/res_tmodDecideTests.csv
vignettes/bibliography.bib
vignettes/logo.png
vignettes/style.css
vignettes/tmod.Rmd
data/datalist
data/modmetabo.rda
data/vaccination.rda
data/EgambiaResults.rda
data/Egambia.rda
data/tmod.rda
data/tbmprof.rda
data/cell_signatures.rda
man/tmodPanelPlot.Rd
man/tmodTagcloud.Rd
man/filterGS.Rd
man/tmodImportMSigDB.Rd
man/upset.Rd
man/getGenes.Rd
man/showGene.Rd
man/hgEnrichmentPlot.Rd
man/pvalEffectPlot.Rd
man/vaccination.Rd
man/tmodPal.Rd
man/pcaplot.Rd
man/tmodUtest.Rd
man/Egambia.Rd
man/makeTmodFromDataFrame.Rd
man/check_tmod_gs.Rd
man/getModuleMembers.Rd
man/tmodSummary.Rd
man/tmod2DataFrame.Rd
man/cell_signatures.Rd
man/tmod2tmodGS.Rd
man/modmetabo.Rd
man/ggPanelplot.Rd
man/tmodLimmaTopTable.Rd
man/simplePie.Rd
man/tmodLEA.Rd
man/eigengene.Rd
man/modGroups.Rd
man/tmodLEASummary.Rd
man/evidencePlot.Rd
man/ggEvidencePlot.Rd
man/tmodGS-class.Rd
man/tmod_ids.Rd
man/tmod-package.Rd
man/modcors.Rd
man/modjaccard.Rd
man/tmod-data.Rd
man/modCorPlot.Rd
man/tmodLimmaDecideTests.Rd
man/tmodDecideTests.Rd
man/tmodLimmaTest.Rd
man/tmodPCA.Rd
man/modOverlaps.Rd
man/tmodAUC.Rd
man/figures/README-unnamed-chunk-3-1.png
man/figures/logo.png
man/figures/README-unnamed-chunk-3-2.png
man/figures/README-unnamed-chunk-5-1.png
