Files in trace

Tandem Repeat Analysis by Capillary Electrophoresis

NEWS.md README.md R/read_fsa.R R/constructors.R R/find_fragments.R R/assign_index_peaks.R R/extract_functions.R R/plotting.R R/calculate_instability_metrics.R R/classes.R R/data.R R/find_ladders.R R/trace-package.R R/misc.R R/find_alleles.R R/fix_ladders_shiny_app.R R/add_metadata.R R/call_repeats.R inst/doc/plotting_traces.R inst/doc/plotting_traces.Rmd tests/testthat.R tests/testthat/test-assign_index_peaks.R tests/testthat/test-calculate_instability_metrics.R tests/testthat/test-read_fsa.R tests/testthat/test-shinytest2.R tests/testthat/test-constructors.R tests/testthat/test-plotting.R tests/testthat/test-find_ladders.R tests/testthat/test-find_alleles.R tests/testthat/test-find_fragments.R tests/testthat/test-tidiers.R tests/testthat/test-call_repeats.R tests/testthat/test-extract_functions.R tests/testthat/test-add_metadata.R tests/testthat/test-full-pipeline.R tests/testthat/test-classes.R vignettes/plotting_traces.Rmd man/find_fragments.Rd man/extract_alleles.Rd man/call_repeats.Rd man/fix_ladders_manual.Rd man/fix_ladders_interactive.Rd man/find_ladders.Rd man/remove_fragments.Rd man/extract_repeat_correction_summary.Rd man/repeat_table_to_repeats.Rd man/metadata.Rd man/find_alleles.Rd man/plot_batch_correction_samples.Rd man/extract_ladder_summary.Rd man/fragments.Rd man/fragments_repeats.Rd man/generate_trace_template.Rd man/add_metadata.Rd man/assign_index_peaks.Rd man/fragments_trace.Rd man/example_data_repeat_table.Rd man/peak_table_to_fragments.Rd man/trace-package.Rd man/plot_traces.Rd man/plot_repeat_correction_model.Rd man/extract_trace_table.Rd man/read_fsa.Rd man/example_data.Rd man/calculate_instability_metrics.Rd man/plot_data_channels.Rd man/plot_fragments.Rd man/extract_fragments.Rd man/cell_line_fsa_list.Rd man/plot_ladders.Rd