API for Ahhgust/MMDIT
Mitochondrial mixture project
| Global functions | |
|---|---|
| Empop2variant | Man page Source code |
| Hmtdb2Empop | Man page Source code |
| MMDIT | Man page |
| Snp2variant | Man page Source code |
| Variant2snp | Man page Source code |
| addKnownHaplotypes | Man page Source code |
| clopperHelper | Source code |
| countTraversalsMissedNodes | Man page Source code |
| createPlafPan | Man page Source code |
| dbSendQueryAndClear | Source code |
| enumerateTraversalPossibilities | Man page Source code |
| estimateLog10LikelihoodNaive | Man page Source code |
| estimateLog10LikelihoodTheta | Man page Source code |
| estimateLogLikelihood | Man page Source code |
| estimateTheta | Man page Source code |
| expandTraversalEditSequence | Man page Source code |
| expandTraversalGraphDifferences | Man page Source code |
| findExplainingIndividuals | Man page Source code |
| fst_buckleton | Man page Source code |
| getAllDistances | Man page Source code |
| getAmpCoordinates | Man page Source code |
| getAmps | Man page Source code |
| getMitoGenomes | Man page Source code |
| getMixProps | Man page |
| getMtgenomeLength | Man page Source code |
| getMtgenomeSequence | Man page Source code |
| getNN | Man page Source code |
| getPops | Man page Source code |
| getRefAmpSeqs | Man page Source code |
| getSeqdiffCodes | Source code |
| getSeqdiffs | Man page Source code |
| getSeqdiffsByAmp | Man page Source code |
| getTraversalEditDistances | Man page Source code |
| getTraversalHitNodes | Man page Source code |
| getTraversalsEditDistances | Man page Source code |
| getTraversalsHitNodes | Man page Source code |
| getdEploidHaps | Man page |
| harmonizeAR | Man page Source code |
| harmonizePa | Man page Source code |
| harmonizePl | Man page Source code |
| initDB | Source code |
| ksw2_gg_align | Man page Source code |
| listGraphNodes | Man page Source code |
| loadMMDIT | Man page Source code |
| loadReferenceGenome | Man page Source code |
| makeDB | Man page Source code |
| makeDeploidSeqGraph | Man page Source code |
| makeVariantGraph | Man page Source code |
| naiveGetAllNN | Man page Source code |
| naiveGetAllNNBySampAndStop | Man page Source code |
| preprocessMitoGenomes | Man page Source code |
| rmpTheta | Source code |
| rmpWrapper | Source code |
| rundEploid | Man page |
| semicontinuousWrapper | Man page Source code |
| seqdiffs2seq | Man page Source code |
| singleSourceRMP | Source code |
| str2int | Man page Source code |
| suppressBindingNotes | Source code |
| test | Source code |
| testDeploidNN | Source code |
| threepersonMix | Man page Source code |
| traverseSequenceGraph | Man page Source code |
| traverseSequencesGraph | Man page Source code |
| twopersonMix | Man page Source code |
| twopersonMixOriginal | Man page Source code |
| writeAmp | Man page Source code |
| writeOneNNTib | Source code |
| write_mbop | Man page Source code |
