preprocessMitoGenomes: Preprocess mitochondrial genomes
In Ahhgust/MMDIT: Mitochondrial mixture project
View source: R/semicontinuousMixtureInterpretation.R
Description
This takes the output of: getMitoGenomes
and indexes it. In particular, it extracts the unique haplotypes,
adds the haplotype ID to the genomes themselves, and it returns a list of
exactly 2 items.
The first is a dataframe with the genomes data frame
with an n column added (# of times the haplotype was seen) as well as a SeqID (unique ID)
the second is a dataframe with the haplotype sequence, n (# of times seen in database, total),
and the same SeqID
Usage
1
preprocessMitoGenomes(genomes)
Arguments
genomes
a data frame from MMDIT::getMitoGenomes
Ahhgust/MMDIT documentation built on Jan. 27, 2021, 11:48 a.m.
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View source: R/semicontinuousMixtureInterpretation.R
Description
This takes the output of: getMitoGenomes and indexes it. In particular, it extracts the unique haplotypes, adds the haplotype ID to the genomes themselves, and it returns a list of exactly 2 items. The first is a dataframe with the genomes data frame with an n column added (# of times the haplotype was seen) as well as a SeqID (unique ID) the second is a dataframe with the haplotype sequence, n (# of times seen in database, total), and the same SeqID
Usage
1 | preprocessMitoGenomes(genomes)
|
Arguments
genomes |
a data frame from MMDIT::getMitoGenomes |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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