makeDeploidSeqGraph: seqgraphs!
In Ahhgust/MMDIT: Mitochondrial mixture project
Description
generates a sequence graph for NN search
the input is a mitochondrial mixture (in "empop long" format)
the output is a seqgraph (from Haplotypical)
Usage
1
makeDeploidSeqGraph(db, positions, alleles, types, ignoreIndels = TRUE)
Arguments
db
the database handle
positions
positions of alleles in mixture (1-based)
alleles
allele calls in mixture (1-based)
types
type of variation; X == mismatch, I == insertion, D == deletion.
ignoreIndels
Must be set to true. Correctness is only guaranteed if indels are ignored!
Ahhgust/MMDIT documentation built on Jan. 27, 2021, 11:48 a.m.
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Description
generates a sequence graph for NN search the input is a mitochondrial mixture (in "empop long" format) the output is a seqgraph (from Haplotypical)
Usage
1 | makeDeploidSeqGraph(db, positions, alleles, types, ignoreIndels = TRUE)
|
Arguments
db |
the database handle |
positions |
positions of alleles in mixture (1-based) |
alleles |
allele calls in mixture (1-based) |
types |
type of variation; X == mismatch, I == insertion, D == deletion. |
ignoreIndels |
Must be set to true. Correctness is only guaranteed if indels are ignored! |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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