harmonizePl: A helper function to runDeploid()that harmonizes the plaf

In Ahhgust/MMDIT: Mitochondrial mixture project

Description

This function takes a plaf (createPlafPan object), and a vector q of sites from am AltRef (modified createAltRef object) and matches or "harmonizes" the number of sites between both dataframes

Usage

harmonizePl(Plaf, q)

Arguments

Plaf	a dataframe of population level allele frequencies (createPlanPlaf object)
q	vector of sites from an AltRef dataframe with reference and alternate allele counts (modified createAltRef object)

Examples

## Not run: 
# harmonize(plaf,q)

## End(Not run)

Ahhgust/MMDIT documentation built on Jan. 27, 2021, 11:48 a.m.