getMtgenomeSequence: Mito-genome (reference) sequence
In Ahhgust/MMDIT: Mitochondrial mixture project
Description
Returns the self-concatenated mitochondrial reference genome
Self-concatenation allows us to handle the circular alignment problem
(eg, reads, amplicons that span the canonical "start" of the mt-genome)
and coordinates from a circular alignment
Usage
1
getMtgenomeSequence(db, double = TRUE)
Arguments
db
the database handle
double
whether or not the sequence should be self-concatenated (circularized)
Ahhgust/MMDIT documentation built on Jan. 27, 2021, 11:48 a.m.
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Description
Returns the self-concatenated mitochondrial reference genome Self-concatenation allows us to handle the circular alignment problem (eg, reads, amplicons that span the canonical "start" of the mt-genome) and coordinates from a circular alignment
Usage
1 | getMtgenomeSequence(db, double = TRUE)
|
Arguments
db |
the database handle |
double |
whether or not the sequence should be self-concatenated (circularized) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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