loadReferenceGenome: Use this to add the rCRS sequence to MMDIT It adds the record...
In Ahhgust/MMDIT: Mitochondrial mixture project
Description
Usage
Arguments
Examples
Description
Technically any genome would work here, BUT
the difference encodings MUST be with respect to this reference genome!!
i.e., in all likelihood this should *ONLY* be the rCRS sequence.
Usage
1
loadReferenceGenome(db, fastaFile)
Arguments
db
(database handle)
fastaFile
(must be both the name of the file and the path to open it. This is passed directly to seqinr::read.fasta
Examples
1
2
3
4
## Not run:
# loadReferenceGenome(db, paste(dataDir, refGenome, sep="/") )
## End(Not run)
Ahhgust/MMDIT documentation built on Jan. 27, 2021, 11:48 a.m.
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Description Usage Arguments Examples
Description
Technically any genome would work here, BUT the difference encodings MUST be with respect to this reference genome!! i.e., in all likelihood this should *ONLY* be the rCRS sequence.
Usage
1 | loadReferenceGenome(db, fastaFile)
|
Arguments
db |
(database handle) |
fastaFile |
(must be both the name of the file and the path to open it. This is passed directly to seqinr::read.fasta |
Examples
1 2 3 4 | ## Not run:
# loadReferenceGenome(db, paste(dataDir, refGenome, sep="/") )
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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