expandTraversalGraphDifferences: Get the variations from the reference that a traversal...
In Ahhgust/MMDIT: Mitochondrial mixture project
Description
Usage
Arguments
Value
Description
Get the variations from the reference that a traversal through the graph represents.
Usage
1
expandTraversalGraphDifferences(refRS, sgrap, toEx, travInd)
Arguments
refRS
The reference sequence.
sgrap
The graph.
toEx
The traversal set in question.
travInd
The index of the traversal set.
Value
The variants for that traversal through the graph. Three parallel vectors: the first is the location in the reference, the second is the operation type (1 for substitution, 2 for insertion, 3 for deletion), and the third is the relevant character/sequence (is garbage for deletion).
Ahhgust/MMDIT documentation built on Jan. 27, 2021, 11:48 a.m.
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Description Usage Arguments Value
Description
Get the variations from the reference that a traversal through the graph represents.
Usage
1 | expandTraversalGraphDifferences(refRS, sgrap, toEx, travInd)
|
Arguments
refRS |
The reference sequence. |
sgrap |
The graph. |
toEx |
The traversal set in question. |
travInd |
The index of the traversal set. |
Value
The variants for that traversal through the graph. Three parallel vectors: the first is the location in the reference, the second is the operation type (1 for substitution, 2 for insertion, 3 for deletion), and the third is the relevant character/sequence (is garbage for deletion).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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