Snp2variant: Get variants from SNP data

In Ahhgust/MMDIT: Mitochondrial mixture project

Description

This function takes three vectors Position, Allele and Type from the SNPs and returns a vector of variants (e.g. "73G", "73+G", 73-" )

Usage

Snp2variant(Pos, Allele, Type)

Arguments

Pos	A vector of genomic positions for the SNPs (type numeric)
Allele	A vector of nucleotide bases present in the SNPs (character strings). Deletions are represented by ""
Type	A vector of the type of mutation represented by the SNP. Possible values include "Substitution", "Insertion" and "Deletion" (character strings)

Examples

Snp2variant("73", "G", "Substitution")
Snp2variant(c("73", "95", "146"), c("G", "", "C"), c("Substitution", "Deletion", "Insertion"))

Ahhgust/MMDIT documentation built on Jan. 27, 2021, 11:48 a.m.