getNN: finds nearest neighbors

In Ahhgust/MMDIT: Mitochondrial mixture project

Description

finds nearest neighbors

Usage

getNN(alldist, knn = 20, maxdist = -1, useIdentityFunction = FALSE)

Arguments

alldist	the output from getAllDistances
knn	the number of nearest neighbors to find (ties broken arbitrarily)
maxdist	if >-1, returns all neighbors within distance <= maxdist (ignores knn argument)
useIdentityFunction	counts the number of amplicons that differ, not the sum of the distances

Ahhgust/MMDIT documentation built on Jan. 27, 2021, 11:48 a.m.