getRefAmpSeqs: Amplicon sequences of reference
In Ahhgust/MMDIT: Mitochondrial mixture project
Description
Usage
Arguments
Value
Examples
Description
Generates the amplicon sequences
based on the reference sequence.
For use with MMDIT only!
Usage
1
getRefAmpSeqs(db, kit = default_kit)
Arguments
db
the database connection
kit
the kit name (must be a valid KIT in the amps table)
Value
returns data frame with 4 columns: the amp ID, the start coordinate (0-based), the stop coordinate (1-based), and the Seq(uence) of the rcrs for the amp
Examples
1
2
3
4
## Not run:
amps <- getRefAmpSeqs(db, kit="PrecisionID")
## End(Not run)
Ahhgust/MMDIT documentation built on Jan. 27, 2021, 11:48 a.m.
R Package Documentation
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Description Usage Arguments Value Examples
Description
Generates the amplicon sequences based on the reference sequence. For use with MMDIT only!
Usage
1 | getRefAmpSeqs(db, kit = default_kit)
|
Arguments
db |
the database connection |
kit |
the kit name (must be a valid KIT in the amps table) |
Value
returns data frame with 4 columns: the amp ID, the start coordinate (0-based), the stop coordinate (1-based), and the Seq(uence) of the rcrs for the amp
Examples
1 2 3 4 | ## Not run:
amps <- getRefAmpSeqs(db, kit="PrecisionID")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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