expandTraversalEditSequence: Get the edit sequence a traversal represents.
In Ahhgust/MMDIT: Mitochondrial mixture project
Description
Usage
Arguments
Value
Description
Get the edit sequence a traversal represents.
Usage
1
expandTraversalEditSequence(sgrap, toEx, travInd)
Arguments
sgrap
The graph.
toEx
The traversal set in question.
travInd
The index of the traversal set.
Value
The edit script to go from the query sequence to the reference graph. Three parallel vectors: the first is the location in the (current state of the) query, the second is the operation type (1 for substitution, 2 for insertion, 3 for deletion), and the third is the character (is garbage for deletion).
Ahhgust/MMDIT documentation built on Jan. 27, 2021, 11:48 a.m.
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Description Usage Arguments Value
Description
Get the edit sequence a traversal represents.
Usage
1 | expandTraversalEditSequence(sgrap, toEx, travInd)
|
Arguments
sgrap |
The graph. |
toEx |
The traversal set in question. |
travInd |
The index of the traversal set. |
Value
The edit script to go from the query sequence to the reference graph. Three parallel vectors: the first is the location in the (current state of the) query, the second is the operation type (1 for substitution, 2 for insertion, 3 for deletion), and the third is the character (is garbage for deletion).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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