Files in Ahhgust/MMDIT

Mitochondrial mixture project

R/MMDIT.R R/RcppExports.R R/initMMDIT.R R/semicontinuousMixtureInterpretation.R R/utpalFunctions.R man/Empop2variant.Rd man/Hmtdb2Empop.Rd man/MMDIT.Rd man/Snp2variant.Rd man/Variant2snp.Rd man/addKnownHaplotypes.Rd man/countTraversalsMissedNodes.Rd man/createPlafPan.Rd man/enumerateTraversalPossibilities.Rd man/estimateLog10LikelihoodNaive.Rd man/estimateLog10LikelihoodTheta.Rd man/estimateLogLikelihood.Rd man/estimateTheta.Rd man/expandTraversalEditSequence.Rd man/expandTraversalGraphDifferences.Rd man/findExplainingIndividuals.Rd man/fst_buckleton.Rd man/getAllDistances.Rd man/getAmpCoordinates.Rd man/getAmps.Rd man/getMitoGenomes.Rd man/getMixProps.Rd man/getMtgenomeLength.Rd man/getMtgenomeSequence.Rd man/getNN.Rd man/getPops.Rd man/getRefAmpSeqs.Rd man/getSeqdiffs.Rd man/getSeqdiffsByAmp.Rd man/getTraversalEditDistances.Rd man/getTraversalHitNodes.Rd man/getTraversalsEditDistances.Rd man/getTraversalsHitNodes.Rd man/getdEploidHaps.Rd man/harmonizeAR.Rd man/harmonizePa.Rd man/harmonizePl.Rd man/ksw2_gg_align.Rd man/listGraphNodes.Rd man/loadMMDIT.Rd man/loadReferenceGenome.Rd man/makeDB.Rd man/makeDeploidSeqGraph.Rd man/makeVariantGraph.Rd man/naiveGetAllNN.Rd man/naiveGetAllNNBySampAndStop.Rd man/preprocessMitoGenomes.Rd man/rundEploid.Rd man/semicontinuousWrapper.Rd man/seqdiffs2seq.Rd man/str2int.Rd man/threepersonMix.Rd man/traverseSequenceGraph.Rd man/traverseSequencesGraph.Rd man/twopersonMix.Rd man/twopersonMixOriginal.Rd man/writeAmp.Rd man/write_mbop.Rd