Files in BMILAB/movAPA

movAPA: Modeling and Visualization of Dynamics of Alternative PolyAdenylation

R/R_funclib_GFF.r R/R_funclib_movAPA.r R/movVizSc.R README.md inst/doc/movAPA_data_input.R inst/doc/movAPA_data_input.Rmd inst/doc/movAPA_data_input.pdf inst/doc/movAPA_on_mouse_sperm_cells.R inst/doc/movAPA_on_mouse_sperm_cells.Rmd inst/doc/movAPA_on_mouse_sperm_cells.pdf inst/doc/movAPA_on_rice_tissues.R inst/doc/movAPA_on_rice_tissues.Rmd inst/doc/movAPA_on_rice_tissues.pdf inst/doc/movAPA_on_scAPAtrap_results.R inst/doc/movAPA_on_scAPAtrap_results.Rmd inst/doc/movAPA_on_scAPAtrap_results.pdf man/PACdataset-class.Rd man/PACds.Rd man/annotateByKnownPAC.Rd man/annotateByPAS.Rd man/annotatePAC.Rd man/asAnyMatrix.Rd man/buildRefPACdsAnno.Rd man/countOvpPACds.Rd man/createPACdataset.Rd man/demo_peaks.Rd man/ext3UTRPACds.Rd man/faFromPACds.Rd man/findOvpPACds.Rd man/get3UTRAPAds.Rd man/get3UTRAPApd.Rd man/getNearbyPAdist.Rd man/getVarGrams.Rd man/heatmapResults-class.Rd man/kcount.Rd man/length.Rd man/makeExamplePACds.Rd man/mergePACds.Rd man/mergePACds_v0.Rd man/movAPA-package.Rd man/movAPASwitchRes-class.Rd man/movAPAindex.Rd man/movAPAindexDiff.Rd man/movAPAswitch.Rd man/movDEGene.Rd man/movDEGeneRes-class.Rd man/movDEPAC.Rd man/movDEPACRes-class.Rd man/movIndexDiffRes-class.Rd man/movPAindex.Rd man/movRes-class.Rd man/movRes2heatmapResults.Rd man/movSelect.Rd man/movStat.Rd man/movUTRTrendRes-class.Rd man/movUTRtrend.Rd man/movViz.Rd man/movVizSC.Rd man/normalizePACds.Rd man/outputHeatStat.Rd man/parseGenomeAnnotation.Rd man/parseGff.Rd man/parseTxdb.Rd man/plotATCGforFAfile.Rd man/plotCummPAindex.Rd man/plotHeatmap.Rd man/plotPACdsStat.Rd man/plotSeqLogo.Rd man/rbind.Rd man/readDESeqDs.Rd man/readPACds.Rd man/removePACdsIP.Rd man/samplePACds.Rd man/scPACds.Rd man/subscript_operator.Rd man/subsetHeatmap.Rd man/subsetPACds.Rd man/summary.Rd man/testExt3UTR.Rd man/writePACds.Rd vignettes/movAPA_data_input.Rmd vignettes/movAPA_on_mouse_sperm_cells.Rmd vignettes/movAPA_on_rice_tissues.Rmd vignettes/movAPA_on_scAPAtrap_results.Rmd