BasicAnalHuman: BasicAnalHuman

In CaronLab/MHCIatlas: Package to reproduce data analysis and further explore the data depicted by Kubiniok et al. 2021 in 'Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale'.

Description

Function to provide basic analysis and visualization of human MHCI tissue draft (MHCI peptides per tissue and principal component analysis)

Usage

BasicAnalHuman(df_human, df_mouse = NULL)

Arguments

df_human	Human MHCI data frame, usually an output from the function 'GetHumanMHCIdata'
df_mouse	Optional parameter; Mouse MHCI data frame, usually an output from the function 'GetMouseMHCIdata', Default: NULL

Details

If df_mouse is specified, mouse and human MHCI tissue drafts are directly compared

Value

List of plots of the analysis

See Also

tally,group_by,summarise_all ggplot,aes,geom_boxplot,theme,margin,labs,geom_smooth,geom_point fct_reorder PCA get_pca,fviz_pca stat_poly_eq geom_label_repel ggdraw,draw_plot,draw_plot_label

Examples

## Not run: 
BasicAnalHuman(df_human)

## End(Not run)

CaronLab/MHCIatlas documentation built on March 10, 2021, 12:38 a.m.