mkFigure5: mkFigure5

In CaronLab/MHCIatlas: Package to reproduce data analysis and further explore the data depicted by Kubiniok et al. 2021 in 'Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale'.

Description

Function to plot Figure 4 of the manuscript

Usage

mkFigure5(
  df_human,
  HumanHousekeepers,
  df_mouse,
  useDefaultCons = TRUE,
  ConsMouse = NA,
  ConsHuman = NA
)

Arguments

df_human	Human MHCI tissue draft data frame from GetHumanMHCI data
HumanHousekeepers	List output from function HousekeepersHuman
df_mouse	Mouse MHCI tissue draft data frame from GetMouseMHCI data
useDefaultCons	Uses conservatio scores calculated with defulat values as in manuscript, Default: TRUE
ConsMouse	Output list from ConservationMouse (Needed if useDefaultCons is set to FLASE), Default: NA
ConsHuman	Output list from ConservationHuman (Needed if useDefaultCons is set to FLASE), Default: NA

Details

DETAILS

Value

List with ggplot2 objects and data to generate the figure

See Also

ggplot,aes,scale_colour_brewer,geom_path,facet_grid,theme,margin,labs,geom_bar,lims,geom_boxplot,ggtheme ggdraw,draw_plot,draw_plot_label as.ggplot org.Mm.eg.db

Examples

## Not run: 
F5<- mkFigure5(df_human,cons_h,df_mouse)

## End(Not run)

CaronLab/MHCIatlas documentation built on March 10, 2021, 12:38 a.m.