BasicAnalMouse: BasicAnalMouse

In CaronLab/MHCIatlas: Package to reproduce data analysis and further explore the data depicted by Kubiniok et al. 2021 in 'Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale'.

Description

Function to provide basic analysis and visualization of mouse MHCI tissue draft (MHCI peptides per tissue and principal component analysis)

Usage

BasicAnalMouse(df_mouse, returnPlotsOnly = FALSE)

Arguments

df_mouse	Mouse MHCI data frame, usually an output from the function 'GetMouseMHCIdata'
returnPlotsOnly	Only plots will be returned if TRUE and plots and data will be returned as a list if set to FALSE, Default: FALSE

Details

Returned data frame is a matrix of peptide intensities across tissues

Value

List of plots and data

See Also

ggplot,aes,geom_bar,theme,labs,scale_colour_brewer PCA get_pca,fviz_pca ggdraw,draw_plot,draw_plot_label

Examples

## Not run: 
BasicAnalMouse(df_mouse)

## End(Not run)

CaronLab/MHCIatlas documentation built on March 10, 2021, 12:38 a.m.