mkHumanConnectivityMap: mkHumanConnectivityMap

In CaronLab/MHCIatlas: Package to reproduce data analysis and further explore the data depicted by Kubiniok et al. 2021 in 'Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale'.

Description

Function to generate human connectivity map and allele enrichment map

Usage

mkHumanConnectivityMap(
  df_human,
  returnPlotsOnly = FALSE,
  AlleleEnrichThr = 1.5
)

Arguments

df_human	Data frame containing MHCI tissue draft data from GetHumanMHCIdata
returnPlotsOnly	Loical, Default: FALSE
AlleleEnrichThr	Min fold change value above which an allele is considered enriched within a given tissue, Default: 1.5

Value

list with ggplot2 objects and results data

See Also

group_by,summarise,n,mutate,tally,mutate_all spread melt,cast RColorBrewer pheatmap forceSymmetric

Examples

## Not run: 
mkHumanConnectivityMap(df_human, returnPlotsOnly=F,AlleleEnrichThr=1.5)

## End(Not run)

CaronLab/MHCIatlas documentation built on March 10, 2021, 12:38 a.m.