mkFigure4: mkFigure4

In CaronLab/MHCIatlas: Package to reproduce data analysis and further explore the data depicted by Kubiniok et al. 2021 in 'Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale'.

Description

Function to plot Figure 4 of the manuscript

Usage

mkFigure4(df_mouse)

Arguments

df_mouse

Mouse MHCI tissue draft data frame from GetMouseMHCI data

Details

Mouse mRNA expression data were retrieved from: Söllner, J., Leparc, G., Hildebrandt, T. et al. An RNA-Seq atlas of gene expression in mouse and rat normal tissues. Sci Data 4, 170185 (2017). https://doi.org/10.1038/sdata.2017.185

Value

List with ggplot2 objects and data to generate the figure

See Also

org.Mm.eg.db group_by,summarise_all,tally pheatmap RColorBrewer ggplot,aes,geom_violin,facet_wrap,geom_boxplot,theme,margin,scale_colour_brewer PieDonut ggdraw,draw_plot,draw_plot_label as.ggplot

Examples

## Not run: 
F4 <- mkFigure4(df_human,df_mouse)

## End(Not run)

CaronLab/MHCIatlas documentation built on March 10, 2021, 12:38 a.m.