mkFigure6: mkFigure6

In CaronLab/MHCIatlas: Package to reproduce data analysis and further explore the data depicted by Kubiniok et al. 2021 in 'Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale'.

Description

makes plot for Figure 6 B,C and D (A is only the cartoon)

Usage

mkFigure6(corr_human, corr_mouse, GO_human = NA, GO_mouse = NA)

Arguments

corr_human	correlation output from MakeCorrHuman
corr_mouse	correlation output from MakeCorrMouse
GO_human	data frame containing GO_terms for human proteins that significantly correlate (See output corr_human), file contains column with GO_terms named 'Gene.Set.Name' and column with qvalue named 'FDR.qvalue', Default is taking GO terms as in publication, Default: NA
GO_mouse	data frame containing GO_terms for mouse proteins that significantly correlate (See output corr_human), file contains column with GO_terms named 'Gene.Set.Name' and column with qvalue named 'FDR.qvalue', Default is taking GO terms as in publication, Default: NA

Details

DETAILS

Value

Figure 6 and GO term data

See Also

melt ggplot,aes,geom_bar,coord_flip,scale_colour_gradient,theme,margin,scale_x_discrete label_wrap ggdraw,draw_plot,draw_plot_label

Examples

## Not run: 
mkFigure6(corr_human,corr_mouse)

## End(Not run)

CaronLab/MHCIatlas documentation built on March 10, 2021, 12:38 a.m.