tx_variance_explained: tx_variance_explained

In CshlSiepelLab/tuSelecter2: Deconvolution of Expression for Nascent RNA Sequencing Data

Description

Calculates fraction of variance in the data explained per transcript/combination of n transcripts at a locus.

Usage

tx_variance_explained(models, abundance, data, masks, n = 1)

Arguments

models	the matrix of transcript models
abundance	a vector of abundance values, one per model
data	a vector of count data
masks	an integer vector of positions to be masked
n	the number of model with non-zero abundance that can be used to explain variance. If fewer models available it will use all available models. Note that some models correspond to multiple transcripts due to high similarity in co-ordinates.

Value

a vector of the variance explained per model where the names indicate the models each entry corresponds to. When there are multiple models being used they are seperated by a "_" delimiter

CshlSiepelLab/tuSelecter2 documentation built on July 18, 2021, 5:09 p.m.