view_available_txdb: Retrieve ensembl biomart
In CshlSiepelLab/tuSelecter2: Deconvolution of Expression for Nascent RNA Sequencing Data
View source: R/txdb_handling.R
view_available_txdb R Documentation
Retrieve ensembl biomart
Description
Convenience function for retrieving information about available ensembl marts
that can be turned into TxDbs.
Usage
view_available_txdb(species = NULL, ensembl_version = NULL)
Arguments
species
the species to download the TxDb for. Use the first letter
of the genus and the full species as one string (e.g. homo sapiens ->
hsapiens). If not specified will return all species.
ensembl_version
The Ensembl release version. Defaults to current
release.
Value
A data.frame of available datasets
CshlSiepelLab/tuSelecter2 documentation built on June 2, 2025, 7:09 a.m.
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View source: R/txdb_handling.R
| view_available_txdb | R Documentation |
Retrieve ensembl biomart
Description
Convenience function for retrieving information about available ensembl marts that can be turned into TxDbs.
Usage
view_available_txdb(species = NULL, ensembl_version = NULL)
Arguments
species |
the species to download the TxDb for. Use the first letter of the genus and the full species as one string (e.g. homo sapiens -> hsapiens). If not specified will return all species. |
ensembl_version |
The Ensembl release version. Defaults to current release. |
Value
A data.frame of available datasets
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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