| apply_ancova | =========================================================================... |
| apply_event_position | =========================================================================... |
| apply_manova | =========================================================================... |
| apply_t_test | =========================================================================... |
| apply_Ttest_delay | =========================================================================... |
| apply_t_test_ti | =========================================================================... |
| check_input | =========================================================================... |
| dataframe_summary | =========================================================================... |
| dataframe_summary_events | =========================================================================... |
| dataframe_summary_events_HL_int | =========================================================================... |
| dataframe_summary_events_ps_itss | =========================================================================... |
| dataframe_summary_events_velocity | =========================================================================... |
| dataframe_summary_TI | =========================================================================... |
| event_dataframe | =========================================================================... |
| example_input_e_coli | An example SummarizedExperiment from E. coli An example... |
| example_input_minimal | An artificial example SummarizedExperiment An example... |
| example_input_synechocystis_6803 | An example input data frame from Synechocystis PCC 6803 A... |
| finding_PDD | =========================================================================... |
| finding_TI | =========================================================================... |
| fit_e_coli | The result of rifi_fit for E.coli example data A... |
| fit_minimal | The artificial result of rifi_fit for artificial example data... |
| fit_synechocystis_6803 | The result of rifi_fit for Synechocystis 6803 example data A... |
| fold_change | =========================================================================... |
| fragmentation_e_coli | The result of rifi_fragmentation for E.coli example data A... |
| fragmentation_minimal | The result of rifi_fragmentation for artificial example data... |
| fragmentation_synechocystis_6803 | The result of rifi_fragmentation for Synechocystis 6803... |
| fragment_delay | =========================================================================... |
| fragment_HL | =========================================================================... |
| fragment_inty | =========================================================================... |
| fragment_TI | =========================================================================... |
| gff3_preprocess | =========================================================================... |
| make_df | =========================================================================... |
| make_pen | =========================================================================... |
| nls2_fit | =========================================================================... |
| penalties_e_coli | The result of rifi_penalties for E.coli example data. A... |
| penalties_minimal | The result of rifi_penalties for artificial example data A... |
| penalties_synechocystis_6803 | The result of rifi_penalties for Synechocystis 6803 example... |
| predict_ps_itss | =========================================================================... |
| preprocess_e_coli | The result of rifi_preprocess for E.coli example data A... |
| preprocess_minimal | The result of rifi_preprocess for artificial example data A... |
| preprocess_synechocystis_6803 | The result of rifi_preprocess for Synechocystis 6803 example... |
| res_minimal | The result of event_dataframe for E.coli artificial example.... |
| rifi_fit | =========================================================================... |
| rifi_fragmentation | =========================================================================... |
| rifi_penalties | =========================================================================... |
| rifi_preprocess | =========================================================================... |
| rifi_stats | rifi_stats wraps all statistical prediction steps... |
| rifi_summary | =========================================================================... |
| rifi_visualization | =========================================================================... |
| rifi_wrapper | =========================================================================... |
| segment_pos | =========================================================================... |
| stats_e_coli | The result of rifi_stats for E.coli example data A... |
| stats_minimal | The result of rifi_stats for artificial example data A... |
| stats_synechocystis_6803 | The result of rifi_stats for Synechocystis 6803 example data... |
| summary_e_coli | The result of rifi_summary for E.coli example data A... |
| summary_minimal | The result of rifi_summary for artificial example data A... |
| summary_synechocystis_6803 | The result of rifi_summary for Synechocystis 6803 example... |
| TI_fit | =========================================================================... |
| TUgether | =========================================================================... |
| viz_pen_obj | =========================================================================... |
| wrapper_e_coli | The result of rifi_wrapper for E.coli example data A list of... |
| wrapper_minimal | The result of rifi_wrapper for E.coli artificial example. A... |
| wrapper_summary_synechocystis_6803 | The result of rifi_wrapper for summary_synechocystis_6803... |
