API for FertigLab/ATACCoGAPS
Analysis Tools for scATACseq Data with CoGAPS
| Global functions | |
|---|---|
| ATACTransferLearning | Man page Source code |
| RNAseqTFValidation | Man page Source code |
| applyGREAT | Man page Source code |
| cgapsPlot | Man page Source code |
| dataSubsetBySparsity | Man page Source code |
| exampleMotifList | Man page |
| findOverlap | Source code |
| findRegulatoryNetworks | Man page Source code |
| foldAccessibility | Man page Source code |
| geneAccessibility | Man page Source code |
| geneMatch | Source code |
| genePatternMatch | Man page Source code |
| geneRanges | Source code |
| getTFDescriptions | Man page Source code |
| getTFs | Man page Source code |
| heatmapGeneAccessibility | Man page Source code |
| heatmapPatternMarkers | Man page Source code |
| heatmapPatternMatrix | Man page Source code |
| motifPatternMatch | Man page Source code |
| motifSummarization | Man page Source code |
| paths | Source code |
| pathwayMatch | Man page Source code |
| patternAccessibleMotifs | Source code |
| patternMarkerCellClassifier | Man page Source code |
| peaksToGRanges | Man page Source code |
| schepCellTypes | Man page |
| schepCogapsResult | Man page |
| schepGranges | Man page |
| schepPeaks | Man page |
| simpleMotifTFMatch | Man page Source code |
| subsetSchepData | Man page |
| tfData | Man page |
