Files in FertigLab/ATACCoGAPS
Analysis Tools for scATACseq Data with CoGAPS

.Rbuildignore

.github/workflows/r-build-check.yml

.gitignore

DESCRIPTION

NAMESPACE

NEWS

R/ATACTransferLearning.R R/RNAseqTFValidation.R R/applyGREAT.R R/cgaps_plot.R R/data.R R/dataSubset_by_sparsity.R R/foldAccessibility.R R/geneAccessibility.R R/genePathwayMatchingV2.R R/genePeakMatchingv2.R R/heatmapGeneAccessibility.R R/heatmapPatternMatrix.R R/heatmap_pattern_marker_regions.R R/motifPatternMatch.R R/motifSummarization.R R/patternMarkerCellClassifier.R R/peaksToGRanges.R R/simpleMotifTFMatch.R

R/sysdata.rda

data/exampleMotifList.rda

data/schepCellTypes.rda

data/schepCogapsResult.rda

data/schepGranges.rda

data/schepPeaks.rda

data/subsetSchepData.rda

data/tfData.rda

man/ATACTransferLearning.Rd man/RNAseqTFValidation.Rd man/applyGREAT.Rd man/cgapsPlot.Rd man/dataSubsetBySparsity.Rd man/exampleMotifList.Rd man/foldAccessibility.Rd man/geneAccessibility.Rd man/genePatternMatch.Rd man/heatmapGeneAccessibility.Rd man/heatmapPatternMarkers.Rd man/heatmapPatternMatrix.Rd man/motifPatternMatch.Rd man/motifSummarization.Rd man/pathwayMatch.Rd man/patternMarkerCellClassifier.Rd man/peaksToGRanges.Rd man/schepCellTypes.Rd man/schepCogapsResult.Rd man/schepGranges.Rd man/schepPeaks.Rd man/simpleMotifTFMatch.Rd man/subsetSchepData.Rd man/tfData.Rd

vignettes/.gitignore

vignettes/ATACCoGAPS.Rmd

FertigLab/ATACCoGAPS documentation built on Oct. 24, 2024, 9:31 a.m.

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