net_dis_pcoa: Visulization of spectra network distance as PCoA.

In Guan06/mina: Microbial community dIversity and Network Analysis

Description

Visulization of spectra network distance as PCoA.

Visulization of spectra network distance as PCoA.

Usage

net_dis_pcoa(x)

## S4 method for signature 'character'
net_dis_pcoa(x)

Arguments

x	The folder with all egv files generated by net_dis_indi().

Value

p The plotted figure.

p The plotted figure.

Examples

## Not run: 
data(maize)
norm(maize) <- maize_asv2
maize <- fit_tabs(maize)
maize <- bs_pm(maize, group = "Compartment", individual = TRUE, out_dir =
"./individual_bs_pm/")
maize <- net_dis_indi("./individual_bs_pm/", method = "spectra", egv = TRUE,
dir = "./egv_folder/")
p <- net_dis_pcoa("./egv_folder/")

## End(Not run)
## Not run: 
data(maize)
maize <- norm_tab(maize)
maize <- fit_tabs(maize)
maize <- get_rep(maize, top = 5)
maize <- bs_pm(maize, group = "Compartment", individual = TRUE, out_dir =
"./individual_bs_pm/")
maize <- net_dis_indi("./individual_bs_pm/", method = "spectra", egv = TRUE,
dir = "./egv_folder/")
p <- net_dis_pcoa("./egv_folder/")

## End(Not run)

Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.