norm_by_raref: Function for normalization by rarefying the samples into the...
In Guan06/mina: Microbial community dIversity and Network Analysis
Description
Usage
Arguments
Value
Description
Function for normalization by rarefying the samples into the same depth,
modified from phyloseq, find it
here.
Usage
1
norm_by_raref(x, depth = 1000, replace = TRUE)
Arguments
x
A quantitative table with sample in columns and compositions in rows.
depth
The depth for rarefying, 1000 by default.
replace
Whether to sample with replacement (TRUE) or without
replacement (FALSE). Default TRUE for computational efficiency.
Value
A normalized quantitative table.
Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.
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Description Usage Arguments Value
Description
Function for normalization by rarefying the samples into the same depth, modified from phyloseq, find it here.
Usage
1 | norm_by_raref(x, depth = 1000, replace = TRUE)
|
Arguments
x |
A quantitative table with sample in columns and compositions in rows. |
depth |
The depth for rarefying, 1000 by default. |
replace |
Whether to sample with replacement ( |
Value
A normalized quantitative table.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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