norm_tab-mina: Normalize the quantitative table with mina input.

In Guan06/mina: Microbial community dIversity and Network Analysis

Description

Normalize the quantitative table with mina input.

Usage

## S4 method for signature 'mina,ANY'
norm_tab(x, method, depth = 1000, replace = TRUE, multi = 1, ...)

## S4 method for signature 'mina,character'
norm_tab(x, method, depth = 1000, replace = TRUE, multi = 1, ...)

Arguments

x	An object of the class mina with @tab defined.
method	The method used for normalization.
depth	The depth for subsampling by rarefying, 1000 by default.
replace	Whether to sample with replacement (TRUE by default) or without replacement (FALSE) when using method 'raref'.
multi	Rarefy the table for multiple times, FALSE by default, indicate the times of rarefaction want to be repeated, only validate for rarefaction.
...	Additional parameters.

Value

x An object of the class mina with @norm added.

Examples

maize <- new("mina", tab = maize_asv2, des = maize_des2)
maize <- norm_tab(maize, method = "raref", depth = 1000, replace = TRUE,
multi = 3)

Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.