sparcc: Function for 'sparcc' correlation calculation. Modified from...
In Guan06/mina: Microbial community dIversity and Network Analysis
Description
Usage
Arguments
Value
Examples
Description
Function for 'sparcc' correlation calculation. Modified from
Schmidt et al. 2016, find the scripts
here
and the SparCC paper here.
Usage
1
sparcc(x, threads = 80, nblocks = 400)
Arguments
x
An matrix for correlation calculation.
threads
The number of threads used for parallel running, 80 by
default.
nblocks
The number of row /column for splitting sub-matrix, 400 by
default.
Value
y The adjacency matrix.
Examples
1
2
3
4
## Not run:
asv_sparcc <- sparcc(maize_asv2, threads = 2, nblocks = 40)
## End(Not run)
Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.
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Description Usage Arguments Value Examples
Description
Function for 'sparcc' correlation calculation. Modified from Schmidt et al. 2016, find the scripts here and the SparCC paper here.
Usage
1 | sparcc(x, threads = 80, nblocks = 400)
|
Arguments
x |
An matrix for correlation calculation. |
threads |
The number of threads used for parallel running, 80 by default. |
nblocks |
The number of row /column for splitting sub-matrix, 400 by default. |
Value
y The adjacency matrix.
Examples
1 2 3 4 | ## Not run:
asv_sparcc <- sparcc(maize_asv2, threads = 2, nblocks = 40)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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