tina: TINA community dissimilarity used in 'com_dis'. Function for...
In Guan06/mina: Microbial community dIversity and Network Analysis
Description
Usage
Arguments
Value
Examples
Description
TINA community dissimilarity used in com_dis.
Function for 'tina' dissimilarity/distance calculation. Modified from Schmidt
et al., 2016.
Usage
1
Arguments
x
An matrix for dissimilarity calculation.
...
Additional parameters.
Value
The output 'tina' dissimilarity matrix.
Examples
1
2
3
4
5
6
7
8
## Not run:
asv_norm <- norm_tab(maize_asv2, method = "raref", depth = 1000)
asv_dis <- com_dis(asv_norm, method = "bray")
asv_dis <- com_dis(asv_norm, method = "tina", threads = 8, nblocks = 40)
asv_tina <- tina(asv_norm, cor_method = "spearman", sim_method = "w_ja",
threads = 8, nblocks = 40)
## End(Not run)
Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.
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Description Usage Arguments Value Examples
Description
TINA community dissimilarity used in com_dis.
Function for 'tina' dissimilarity/distance calculation. Modified from Schmidt
et al., 2016.
Usage
1 |
Arguments
x |
An matrix for dissimilarity calculation. |
... |
Additional parameters. |
Value
The output 'tina' dissimilarity matrix.
Examples
1 2 3 4 5 6 7 8 | ## Not run:
asv_norm <- norm_tab(maize_asv2, method = "raref", depth = 1000)
asv_dis <- com_dis(asv_norm, method = "bray")
asv_dis <- com_dis(asv_norm, method = "tina", threads = 8, nblocks = 40)
asv_tina <- tina(asv_norm, cor_method = "spearman", sim_method = "w_ja",
threads = 8, nblocks = 40)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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