Files in HopkinsIDD/phylosamp
Sample Size Calculations for Molecular and Phylogenetic Studies

.Rbuildignore

.gitignore

CRAN-SUBMISSION

DESCRIPTION

NAMESPACE

NEWS.md R/exp_links.R R/falsediscoveryrate.R R/genDistSim.R R/gen_dists.R R/gendist_distribution.R R/gendist_roc_format.R R/gendist_sensspec_cutoff.R R/get_optim_roc.R R/obs_pairs_mtml.R R/obs_pairs_mtsl.R R/obs_pairs_stsl.R R/optim_roc_threshold.R R/phylosamp-package.R R/prob_trans_mtml.R R/prob_trans_mtsl.R R/prob_trans_stsl.R R/relR_power.R R/relR_power_simulated.R R/relR_samplesize.R R/relR_samplesize_basic.R R/relR_samplesize_ci.R R/relR_samplesize_linkerr.R R/relR_samplesize_simsolve.R R/relR_samplesize_solve.R R/samplesize.R R/sens_spec_calc.R R/sens_spec_roc.R R/translink_expected_links_obs.R R/translink_expected_links_obs_mtml.R R/translink_expected_links_obs_mtsl.R R/translink_expected_links_obs_stsl.R R/translink_expected_links_true.R R/translink_expected_links_true_mtml.R R/translink_expected_links_true_mtsl.R R/translink_expected_links_true_stsl.R R/translink_fdr.R R/translink_prob_transmit.R R/translink_prob_transmit_mtml.R R/translink_prob_transmit_mtsl.R R/translink_prob_transmit_stsl.R R/translink_samplesize.R R/translink_tdr.R R/true_pairs.R R/true_pairs_mtml.R R/true_pairs_mtsl.R R/true_pairs_stsl.R R/truediscoveryrate.R R/utils.R R/varfreq_cdf_logistic.R R/varfreq_expected_mbias.R R/varfreq_freq_logistic.R R/varfreq_obs_freq.R R/vartrack_cod_ratio.R R/vartrack_prob_detect.R R/vartrack_prob_detect_cont.R R/vartrack_prob_detect_xsect.R R/vartrack_prob_prev.R R/vartrack_prob_prev_xsect.R R/vartrack_samplesize_detect.R R/vartrack_samplesize_detect_cont.R R/vartrack_samplesize_detect_xsect.R R/vartrack_samplesize_prev.R R/vartrack_samplesize_prev_xsect.R README.md

_pkgdown.yml

cran-comments.md

data/genDistSim.rda

docs/404.html

docs/_config.yml

docs/articles/L1_FalseDiscoveryRate.html

docs/articles/L2_SampleSize.html

docs/articles/L3_SensitivitySpecificity.html

docs/articles/L4_IllustrativeExamples.html

docs/articles/L4_IllustrativeExamples_files/figure-html/gen_dist_compare_ebov-1.png

docs/articles/L4_IllustrativeExamples_files/figure-html/gen_dist_mev_plot-1.png

docs/articles/V1_CoefficientDetectionBias.html

docs/articles/V1_FalseDicoveryRate.html

docs/articles/V1_FalseDicoveryRate_files/header-attrs-2.1/header-attrs.js

docs/articles/V1_FalseDicoveryRate_files/header-attrs-2.10/header-attrs.js

docs/articles/V2_SampleSize.html

docs/articles/V2_SampleSizeCrossSectional.html

docs/articles/V2_SampleSize_files/header-attrs-2.1/header-attrs.js

docs/articles/V2_SampleSize_files/header-attrs-2.10/header-attrs.js

docs/articles/V3_ProbCrossSectional.html

docs/articles/V3_SensitivitySpecificity.html

docs/articles/V3_SensitivitySpecificity_files/header-attrs-2.1/header-attrs.js

docs/articles/V3_SensitivitySpecificity_files/header-attrs-2.10/header-attrs.js

docs/articles/V4_FullExamples.html

docs/articles/V4_FullExamples_files/figure-html/gen_dist_compare_ebov-1.png

docs/articles/V4_FullExamples_files/figure-html/gen_dist_mev_plot-1.png

docs/articles/V4_FullExamples_files/header-attrs-2.1/header-attrs.js

docs/articles/V4_FullExamples_files/header-attrs-2.10/header-attrs.js

docs/articles/V4_SampleSizePeriodic.html

docs/articles/V5_ProbDetectPeriodic.html

docs/articles/V6_IllustrativeExample.html

docs/articles/index.html

docs/articles/variant-surveillance-decision-tree-01.png

docs/articles/variant-surveillance-decision-tree-02.png

docs/articles/variant-surveillance-decision-tree-03.png

docs/articles/variant-surveillance-decision-tree-04.png

docs/articles/variant-surveillance-decision-tree-05.png

docs/articles/variant-surveillance-decision-tree-06.png

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/exp_links.html

docs/reference/falsediscoveryrate.html

docs/reference/figures/lifecycle-archived.svg

docs/reference/figures/lifecycle-defunct.svg

docs/reference/figures/lifecycle-deprecated.svg

docs/reference/figures/lifecycle-experimental.svg

docs/reference/figures/lifecycle-maturing.svg

docs/reference/figures/lifecycle-questioning.svg

docs/reference/figures/lifecycle-stable.svg

docs/reference/figures/lifecycle-superseded.svg

docs/reference/genDistSim.html

docs/reference/gen_dist_sim.html

docs/reference/gen_dists.html

docs/reference/gendist_distribution.html

docs/reference/gendist_roc_format.html

docs/reference/gendist_sensspec_cutoff.html

docs/reference/get_optim_roc.html

docs/reference/index.html

docs/reference/obs_pairs_mtml.html

docs/reference/obs_pairs_mtsl.html

docs/reference/obs_pairs_stsl.html

docs/reference/optim_roc_threshold.html

docs/reference/phylosamp-package.html

docs/reference/prob_trans_mtml.html

docs/reference/prob_trans_mtsl.html

docs/reference/prob_trans_stsl.html

docs/reference/relR_power.html

docs/reference/relR_power_simulated.html

docs/reference/relR_samplesize.html

docs/reference/relR_samplesize_basic.html

docs/reference/relR_samplesize_ci.html

docs/reference/relR_samplesize_linkerr.html

docs/reference/relR_samplesize_opterr.html

docs/reference/relR_samplesize_simsolve.html

docs/reference/relR_samplesize_solve.html

docs/reference/samplesize.html

docs/reference/sens_spec_calc.html

docs/reference/sens_spec_roc.html

docs/reference/translink_expected_links_obs.html

docs/reference/translink_expected_links_obs_mtml.html

docs/reference/translink_expected_links_obs_mtsl.html

docs/reference/translink_expected_links_obs_stsl.html

docs/reference/translink_expected_links_true.html

docs/reference/translink_expected_links_true_mtml.html

docs/reference/translink_expected_links_true_mtsl.html

docs/reference/translink_expected_links_true_stsl.html

docs/reference/translink_fdr.html

docs/reference/translink_prob_transmit.html

docs/reference/translink_prob_transmit_mtml.html

docs/reference/translink_prob_transmit_mtsl.html

docs/reference/translink_prob_transmit_stsl.html

docs/reference/translink_samplesize.html

docs/reference/translink_tdr.html

docs/reference/true_pairs.html

docs/reference/true_pairs_mtml.html

docs/reference/true_pairs_mtsl.html

docs/reference/true_pairs_stsl.html

docs/reference/truediscoveryrate.html

docs/reference/varfreq_cdf_logistic.html

docs/reference/varfreq_expected_mbias.html

docs/reference/varfreq_freq_logistic.html

docs/reference/varfreq_obs_freq.html

docs/reference/vartrack_cod_ratio.html

docs/reference/vartrack_prob_detect.html

docs/reference/vartrack_prob_detect_cont.html

docs/reference/vartrack_prob_detect_xsect.html

docs/reference/vartrack_prob_prev.html

docs/reference/vartrack_prob_prev_xsect.html

docs/reference/vartrack_samplesize_detect.html

docs/reference/vartrack_samplesize_detect_cont.html

docs/reference/vartrack_samplesize_detect_xsect.html

docs/reference/vartrack_samplesize_prev.html

docs/reference/vartrack_samplesize_prev_xsect.html

docs/sitemap.xml

inst/CITATION

man-roxygen/N.R man-roxygen/R_a.R man-roxygen/R_b.R man-roxygen/alpha.R man-roxygen/alternative.R man-roxygen/overdispersion.R man-roxygen/p_a.R man-roxygen/power.R man-roxygen/rho.R man-roxygen/sensitivity.R man-roxygen/specificity.R man/exp_links.Rd man/falsediscoveryrate.Rd

man/figures/lifecycle-archived.svg

man/figures/lifecycle-defunct.svg

man/figures/lifecycle-deprecated.svg

man/figures/lifecycle-experimental.svg

man/figures/lifecycle-maturing.svg

man/figures/lifecycle-questioning.svg

man/figures/lifecycle-stable.svg

man/figures/lifecycle-superseded.svg

vignettes/.gitignore

vignettes/L1_FalseDiscoveryRate.Rmd vignettes/L2_SampleSize.Rmd vignettes/L3_SensitivitySpecificity.Rmd vignettes/L4_IllustrativeExamples.Rmd vignettes/V1_CoefficientDetectionBias.Rmd vignettes/V2_SampleSizeCrossSectional.Rmd vignettes/V3_ProbCrossSectional.Rmd vignettes/V4_SampleSizePeriodic.Rmd vignettes/V5_ProbDetectPeriodic.Rmd vignettes/V6_IllustrativeExample.Rmd

vignettes/figures/gen_dist_compare_ebov-1.png

vignettes/figures/gen_dist_mev_plot-1.png

vignettes/variant-surveillance-decision-tree-01.png

vignettes/variant-surveillance-decision-tree-02.png

vignettes/variant-surveillance-decision-tree-03.png

vignettes/variant-surveillance-decision-tree-04.png

vignettes/variant-surveillance-decision-tree-05.png

vignettes/variant-surveillance-decision-tree-06.png

HopkinsIDD/phylosamp documentation built on May 28, 2023, 3:21 a.m.

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HopkinsIDD/phylosamp
Sample Size Calculations for Molecular and Phylogenetic Studies

Files in HopkinsIDD/phylosamp
Sample Size Calculations for Molecular and Phylogenetic Studies

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HopkinsIDD/phylosamp Sample Size Calculations for Molecular and Phylogenetic Studies

Files in HopkinsIDD/phylosamp Sample Size Calculations for Molecular and Phylogenetic Studies

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HopkinsIDD/phylosamp
Sample Size Calculations for Molecular and Phylogenetic Studies

Files in HopkinsIDD/phylosamp
Sample Size Calculations for Molecular and Phylogenetic Studies